Biology 203 - Evolution
notes and links
 
  This page is constantly under construction.  The numbered links below will jump you to links to the lecture notes (based on Freeman and Herron, 2/e) and to other resources relevant to the chapter.  Lecture notes were generated with Word Perfect or MS Word and can be downloaded  in Word Perfect (.wpd) or Word (.doc) formats -- but be warned that the formatting may get strange.  They are also available as Adobe Acrobat files (.pdf), which can be  read on-line and printed exactly as you see them.  You will need the free Adobe Acrobat Reader, available for downloading from Adobe.  If you have any brilliant ideas for links, let me know! For more links, check out Prentice Hall's text web site here
 
  • 1: Introduction
  • 6. Migration, drift, etc.
  • 12: Speciation
  • 2: Evidence for evolution
  •  7.Quantitative genetics
  • 13: Evolutionary trees
  • 3: Natural selection
  • 8: Studying adaptation
  • 14: Origin of life
  • 4: Genetic variation
  • 9: Sexual selection
  • 15: Cambrian & beyond
  • 5. Selection & mutation
  • 10: Social Behavior
  • 16: Human evolution

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    Chapter 1:  Introduction
  • evo01_introduction.wpd
  • evo01.pdf
  • Study guide


  • Chapter 2:  Darwin and the evidence for evolution
  • evo02_evidence.wpd
  • evo02.pdf
  • Study guide

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    Chapter 3:  Darwinian natural selection
  • evo03_selection.wpd
  • evo03.pdf
  • Study guide

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    Chapter 4: Mutation and genetic variation
  • evo04_genetics.wpd
  • evo04.pdf
  • Study guide

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    Chapter 5: Mendelian genetics in populations I: selection and mutation as mechanisms of evolution
  • evo05_hardyweinberg.wpd
  • evo05.pdf
  • Study guide
  • Answers to sample problems

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    Chapter 6: Mendelian genetics in populations II: migration, drift, non-random mating
  • evo06_migration_etc.wpd
  • evo06.pdf
  • Study guide
    • Several sites offer models of genetic drift.   Genetic Drift Simulation is a pencil-and-paper simulation from the University of Arizona, good for teachers.   Genetic Drift , from the University of Connecticut, lets you plug in allele frequencies and population size and graphs the results.  Jon Herron has developed some excellent simulations of drift and other processes.  Download the AlleleA1 software and exercises and enjoy.
    • The effects of small populations on extinction risk are of major interest to conservation biologists.   Introduction - ALEX introduces you to some of the simulation software used to assess extinction risk based on a variety of ecological parameters using an approach called Population Viability Analysis.
    • The Florida Panther is a classic example of the effects of small population size on inbreeding and inbreeding depression.  Read a good review at  the Florida Panather Net site (check out the link to "Threats").
    • The  Conservation Breeding Specialist Group , a division of the IUCN, is an international conservation organization whose mission is "to assist conservation of threatened animal and plant species through scientific management of small populations in wild habitats, with linkage to captive populations where needed."  This site offers some interesting information on how that's done.

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    Chapter 7: Quantitative genetics
  • evo07_quantgen.wpd
  • evo07.pdf
  • measuring selection illustration
  • Study guide

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    Chapter 8: Studying adaptation: evolutionary analysis of form and function
  • evo08_adaptation.wpd
  • evo08.pdf
  • Study guide
    • The strength of natural selection and the role of constraints, trade-offs, and historical contingency have been the subject of debate among evolutionary biologists since the late 1970's.  Two major players in this debate have been Richard Dawkins (arguing on the side of the pre-eminence of natural selection) and Stephen J. Gould (arguing on the side of important limits to selection in the forms of constraint and contingency). Read Stephen J. Gould’s original argument from his classic paper  “The Spandrels of San Marco and the Panglossian Paradigm” at An adaptationist programme  , a site hosted by the America Academy for the Advancement of Science.  Then read some of their ongoing debates at  The "G-Files" from John Catalano’s excellent website and follow up with Presidential Lectures: Stephen Jay Gould: Commentary: Thurtle , a discussion of their ongoing disagreement by Phillip Stevens Thurtle of Stanford University.
    • DesertUSA 2000 is an on-line magazine about US Deserts features good discussions of the adaptations of plants and animals to survival in arid environments.  Bearing in mind that the statement that a trait is an adaptation is really a hypothesis, how would you test the hypotheses presented in this articles?
    • Department of Plant Population Biology: NIOO-Centre of Terrestrial Ecology: research program and themes presents summaries of ongoing research on phenotypic plasticity in plants.  Some of the descriptions include results of preliminary studies; see if you can make predictions about the outcomes of the future studies as described on the site.
    • CAIC Homepage is the website for the software package Comparative Analysis by Independent Contrasts, developed by Andy Purvis and Andrew Rambau to calculate phylogenetically independent contrasts for comparative studies.

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    Chapter 9: Sexual selection
  • evo09_sexual_selection.wpd
  • evo09.pdf
  • Study guide
    • Sexual selection and the evolution of mating systems are major research topics at a number of institutions.  Read descriptions of current research projects from The Department of Biological and Environmental Sciences at the University of Jrvaskyla; Dr. Frederick Widemo at the Department of Animal Ecology,  Evolutionary Biology Centre in Upsala; and Dr. Matt Persons at Susquehana University .  Each of these pages provides background and theory as well as information about the study organisms; see if you can use this information to devise methods for testing the hypotheses of interest to the researchers.
    • Males’ seeming handicaps advertise a suitor’s worth , an article from US News describes the “handicapped male” hypothesis, developed by Amotz Zahavi in the mid 1970's.  How does this hypothesis fit into the breakdown of hypotheses for female choice presented in the text?  Another hypothesis, presented as an alternative to the “good genes” hypotheses is described at A New Look at Darwinian Sexual Selection ; is this hypothesis really novel?
    • Population density, social pathology, and behavioral ecology

    • By Jim Moore from the Anthropology Department at The University of California, San Diego, this article from the journal Primates presents an alternative to the sexual selection hypothesis for male infanticide in two species of mammals. 
    • Nat'l Academy Press, Biodiversity II: (1996), 18 Comparative Behavioral and Biochemical Studies of Bowerbirds and the Evolution of Bower-Building . This is a review article by Dr. Gerald Borgia from the Department of Biology, University of Maryland, on the evolution of a novel type of male ornamentation – decorated bowers built by male bowerbirds of Australia. 

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    Chapter 10: Kin Selection and Social Behavior
  • evo10_kinselection.doc
  • evo10.pdf
  • Study guide 

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    Chapter 12: Mechanisms of speciation
  • evo12_speciation.wpd
  • evo12.pdf
  • Study guide
  • Animations
    • What is a Species, and What is Not? In this paper from the journal The Philosophy of Science, Mayr explains the biological species concept in the context of the larger question of whether or not species exist in nature.  He also offers his critique of alternative species concepts, including the typological (morphological), evolutionary, and phylogenetic species concepts. 
    • At this site, Jeff Groth of the Department of Ornithology at the American Museum of Natural History discusses species concepts in the context of a specific research question about the specific status of crossbills. Crossbill Natural History  is a good place to start your review.
    • Learn more about red wolves at  Red wolf, Canis rufus, U.S. Fish & Wildlife Service and play with on-line mapping of a population in Algonquin State Park at  Red Wolves / Database .
    • Observed Instances of Speciation From the Talk.Origins archive, this paper discusses different species concepts and processes of speciation, and provides an overview (with references) of instances in which speciation has been observed, either in the field or in laboratory populations.  Its “sister page”, Some More Observed Speciation Events  provides additional references.
    • The Union of Concerned Scientists is an organization of scientists engaged in a variety of political issues with a strong basis in science.  One issue of major concern is the potential consequences of new uses of biotechnology, including the use of genetically engineered crop plants.  For a good overview of the potential problems, check out their Biotechnology - UCS page.

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    Chapter 13: Reconstructing evolutionary trees
  • evo13_phylogeny.wpd
  • evo13.pdf
  • Study guide

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    Chapter 14: The origin of life and Precambrian evolution
  • evo14_abiogenesis.doc
  • evo14.pdf
  • Study guide

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    Chapter 15: The Cambrian explosion and beyond
  • evo15_cambrian.doc
  • evo15.pdf
  • Study guide
  • Ediacaran Fossils of Canada This site, from the Miller Museum of Geology, Queen's University, Canada, describes the significance of the Ediacaran fauna and provides pictures of representative fossils. 
  • Burgess Shale fossils Andrew MacRae, at the University of Calgary, provides descriptions of the Burgess Shale site as well as pictures of a variety of its fossils and links to additional information.
  • The Cambrian Period This page gives an overview of the Cambrian Period and provides links to more information on its stratigraphy, tectonics, early life, and more.  From Science Daily magazine, read Large Gene Study Questions Cambrian Explosion , an article describing the molecular evidence challenging the timing of the Cambrian Explosion.
  • Punctuated Equilibrium at Twenty Dr. Donald Prothero reviews the hypothesis of punctuated equilibrium in this article from the journal Skeptic.
  • BBC Evolution Weekend: Extinction Files - Mass Extinctions

  • Part of the BBC's excellent evolution web site, this page links you to summary information about each of the "Big Five" mass extinction events. The Great Mystery: Background  from UC Berkeley's Museum of Paleontology discusses the end-Cretaceous mass extinction. 
  • IUCN - The World Conservation Union The World Conservation Union website offers a huge variety of information about biodiversity conservation, including a searchable on-line version of the Red Book of sensitive, threatened and endangered species. 
  • Food and Agriculture Organization of the United Nations

  • This site provides information about the state of important global resources.  Look at FAO - Forestry - Home Page  for data on the world's forests. 
  • Center for Biodiversity and ConservationThe American Museum of Natural History offers this on-line version of Humans and Other Catastrophes: Perspectives on Extinction, a report on the Center for Biodiversity and Conservation's 1997 symposium at AMNH. Written by conservationist and author Curt Meine, the report gives an overview of extinction episodes, including the current "Sixth Extinction," the almost certain human causation of recent extinctions, and some possible conservation strategies for the future. For more information on anthropogenic extinctions, see the list of news releases and other resources provided by David Ulansey at Mass Extinction Underway 

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    Chapter 16: Human evolution
  • evo16_humans.doc
  • evo16.pdf
  • evo_16briefhumans.wpd (Fall 2001)
  • evo16b.pdf (Fall 2001)
  • Study guide
    • The web offers a wealth of sites with information related to human evolution.  One of the most comprehensive lists of sites (including links to images of hominid fossils) are Jim Foley’s Fossil Hominids: the evidence for human evolution
    •  Becoming Human: Paleoanthropology, Evolution and Human Origins is an awesome site that includes an on-line documentary of human evolution and interactive exhibits that allow users to explore everything from basic evolutionary theory to profiles of the members of the hominid family tree.  It requires a fast connection, but is well worth the visit.
    • Fossil Evidence for Human Evolution in China is from Dennis Etler at UC Berkeley and  focuses specifically on human evolution in China, with links to a variety of resources including fossil images and research publications.  One of these is The African Emergence and Early Asian Dispersals of the Genus Homo, an on-line version of an American Scientist article by Roy Larick and Russell L. Ciochon that addresses, among other things, the African emergence and multiregional hypotheses.
    • Forensic Anthropology is part of the Osteointeractive web site, a fantastic resource for learning about osteology, one of the underpinnings of paleoanthropology.  The site includes information on human osteology, paleopathology, and histology as well as forensic anthropology.
    • Handprint : Ancestral Lines is a non-technical but good site that brings together information about the hominid fossil record, tools and tool use, dispersal routes, and more in an attractive, accessible format. 
    • Language Acquisition This book chapter by Steven Pinker discusses some of his ideas about the evolution of language.

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    Kerry S. Kilburn, Ph.D
    Department of Biological Sciences
    Old Dominion University
    Norfolk, VA  23529