PLANT PHYSIOLOGY BIOLOGY 412/512 NOTES
 

 Plant Physiology

Dr. Kneeland Nesius
MGB Room 108C
683 4193
knesius@odu.edu
 

Prokaryote cell type:  lacking many membrane structures: nuclear  membrane, E.R., mitochondria, chloroplast, etc; replicate by binary fission
     Heterotrophic nutrition     eubacteria
     Autotrophic  nutrition       cyanobacteria

Eukaryote cell type: advanced cell type (contain many types of membrane organelles); replicate by mitosis
     heterotrophic -  animals, fungi, protistia (ameoba)
     autotrophic - plants, protistia (algae)
 

Kingdoms

Archaebacteria (prokaryote),                 Eubacteria (prokaryote),                                                     Protista  (eukaryote)                                            Plantae (eukaryote)
Fungi   (eukaryote)                                  Animalia (eukaryote)
 
 

Types of Plants:
 

Moss and Ferns-   no seeds, fruit nor flowers- spores used for DNA distribution.

Gymnosperms (pine trees)- seed present, no fruit or flowers, seeds formed in cones, seeds used  for DNA distribution.

Angiosperms (flowering plants)- seeds, fruit, flowers present.   Fruit and seeds are used for DNA distribution.
 
 

Plant Cell  Types

       Meristematic - Apical meristems, vascular cambium, cork cambium

       Parenchyma

       Collenchyma

       Sclerenchyma

       Epidermis

       Cork

       Vascular Tissues: Transporting Tissue

                 Xylem- conducts water and solutes

                 Phloem – conducts photosynthates

Plant Cells -

Unit Membrane – phospholipid bilayer with protein – integral and peripheral
                   (selective absorption, specific recognition sites) page 8 in text

Membrane Bound Organelles

             Nucleus (nuclear membrane, pores, chromatin, nucleolus - ribosome synthesis)
                           Heterochromatin (10%), Euchromatin (90%)

                                  Review transcription and translation in text page 11

             E.R.     Smooth(secrete non protein) and Rough (secrete protein – SRP receptor)

             Golgi Apparatus (trans cisternae and cis cisternae), secretory vesicles
                     secrete non cellulose polysaccharides and glycoproteins (pectin
                     and hemicellulose)

             Vacuoles (tonoplast)

             Mitochondria – cristae, lumen, inner and outer membranes (cristae, matrix -
             permeable to H+ protons)  catabolic reactions, site of aerobic respiration,
             breakdown of energy rich molecules forming biological energy ATP.
 
 

             Plastids:    Chloroplasts  anabolic reactions, organelle where photosynthesis occurs -
                              formation of energy rich molecules utilizing light energy.
                              Amyloplasts (Leucoplast) - stores starch,
                              Chromoplasts - contain colored pigments embeded in membranes

                                             (thylakoids, stroma, nucleoid DNA)

             Plastids are interconvertible  - proplastids, etioplasts, prolamellar bodies
                                                                                                Protochlorophyll  - Chlorophyll

             Mitochondria and Chloroplasts are semiautonomous – Binary Fission, prokaryote
                                ribosomes

             Microbodies:

                    Peroxisomes -  removes hydrogen from organic molecules
                                              forms hydrogen peroxide, photosynthetic cells
                    Glyoxysomes - converts fats into glucose  via glyoxylate cycle

                    Oleosomes - store oils

Nonmembrane Bound Organelles

            Ribosomes

            Cytoskeleton consists of microtubules and microfilaments
 
 

             Cell Wall  - primary and secondary (review secondary cell wall of vascular tissue)
                 (Consists of cellulose, pectins, hemicellulose and lignins)
                       Using web pages look up the structure of these compounds.

                     polycellulose polymers form microfibrils

                     Primary cell wall ( 25% cellulose, 25% hemicellulose, 35% pectins)
                                                Present in all plant cells

                      Secondary (40% cellulose, 35% hemicellulose, 20% lignin)
                                                Present in selected cells

                      Plasmodesmata  Primay and Secondary – ER, desmotubule

                           Symplast living part of a plant cell - cytoplasm
                           Apoplast - nonliing partof a plant cell - cell wall and intrcellular spaces
 

How Cell Walls Form
 

Cell division cell plate forms via microtubules - middle lamella laid down by golgi bodies deposited by vesicles.

Cell membrane forming between the two cells comes from the vesicles depositing cell wall material.
 

Pectins are the most soluble of the cell wall polysaccharides: This will act as the glue in the middle lamella holding the two newly formed cells together.
 

Charged carboxyl groups linked via Ca+2 ions will condense the pectin molecules. In the laboratory on mineral nutrition calcium will be one of the essential elements. Without this element plant cells can not divide. Why?
 

Primary cell wall laid down in the matrix being formed by the golgi secretions above.

Microfibrils will become embedded in the polysaccharide matrix (hemicellulose and pectins).

                         See figure with rossette given out in class.

Review (matrix formed in golgi, vesciles)

Cellulose microfibrils are synthesized at cell membrane.

                 Rossettes embedded in cell membrane – contain many cellulose synthase.
 
 

After  cell wall expansion, secondary cell walls, form in some plant cells.

                More cellulose microfibrils which are aligned parallel to each other

               Phenolic polymer, lignin, present
 
 

                                               Seed  Germination
 
 

                             Young forming seeds are in a quiescent state.

   Quiescent - provide a satisfactory temperature, oxygen level, water – germinate and grow

   Seed Dormancy -  provide a satisfactory temperature, oxygen level, water – will not
                                 germinate and grow

     Read the handout on seed dormancy attaced to the first laboratory exercise.

         Were your seeds in the laboratory dormant or quiescent?

   Seed Coat Dormancy - seed coat must be broken before embryo can grow.
                                       example - persimmons must pass thrugh animal's gut
                                       and expelled in feces, breaking down the seed coat, so
                                       the embryo can grow

   Embryo Dormancy
                  Primary Dormancy   seed with embryo must mature before growing
                  Induced Dormancy

                         1. after ripening - period of time for embryo matures and grows
                         2. Chilling - Stratification - seed must undergo a damp cool period
                         3. Light – stimulates seed germination

  Two Hormones involved -  1. ABA (abscisic acid)  inhibits seed germination
                                                          Example – fruit contains ABA which prevents
                                                             seeds from germinating inside fruit
                                            2. GA (gibberellic acid) stimulates seed germination

                                       Synergic effect of two hormones – Both hormones work together

 What happens when seeds are provided with water, oxygen at optimal temperature?
                Imbibition -
                Hydrate organelles
                Activates Enzymes Present
                Activates Enzyme Synthesis
                Translocation of macromolecules
                Respiration - provides ATP -energy
                Activates Mitosis and Growth/Development

Chemical Composition of Specific Seeds of Economic Importance   -  Chart given out in lecture -
 

                Activates Enzyme Synthesis
                Translocation of macromolecules
                Respiration - provides ATP -energy
                Activates Mitosis and growth

Chemical Composition of Specific Seeds of Economic Importance   -  Chart  given out in lecture-

Species                       Family               Nature of                                Percent Content
                                                         Reserve tissue        Carbohydrate     Protein      Lipid
_________________________________________________________________________
Maize                       Gramineae          Endosperm                51 - 74                10               5
(Zea mays)

Wheat                      Gramineae          Endosperm                75 – 80                13              2
 (Triticum vulgare)
Pea                            Legum                 Cotyledon                  34 – 45                20              2
 (Pisum sativum)
Peanut                                                    Cotyledon                 12 – 33              20 – 30    40 - 50
 (Arachis hypogaea)
Soybean                                                 Cotyledon                     14                     37              17
 (Glycine sp)
 

 Difference in Composition of Soluble Nitrogen - Chart give out in class -
       Note  -      Aspartic Acid, Glutamic Acid, Glutamine, Asparagine
 

                                    Amides  nitrogen transporters

 Parts of Seed - endosperm, scutellum, cotyledon,
                           Changes in seeds during germination - Charts given out in class -
 
 

                               Movement of various macromolecules

          Endosperm or Cotyledon   translocated to growing axis.
 

   Protein                  -> amides          ------->             Protein or Nucleic Acids
   Protein                  -> organic acids + ammonia ------->  Protein or Nucleic Acids
   Carbohydrates     -> glucose or sucrose     -->         Carbohydrates, Lipids, Respiration
  Lipids ->   Organic Acids        -->                              Carbohydrates, Lipids, Respiration
 
 
 
 

    Roots (radicle) will begin the uptake of inorganic nutrients (elements) from soil.

    Root structure - longitudinal section from class or in book
 

                                 See Figures In Text
 
 
 

       corn and rice - ammonium uptake at apex
       barley – calcium uptake at apex
       corn iron taken up at apex or region of elongation
       potassium, nitrate, ammonium and phosphate absorbed freely at all locations

    Mycorrhizal fungus improves uptake phosphate
 
 

                         See Figures In Text
 

  Inorganic elements present in plants  -  handout given out in class
 

      How do you determine which inorganic nutrients are essential?

                      Hydroponic growth system     -      Water Culture or Sand
 
 
 

                            See Figures In Text
 
 
 
 
 
 

                            Macroelements - greater than 10 ug/g dry weight
                                N,Ca,K,Mg,P,S,Si
                            Microelements - less than 10 ug/g dry weight
                                 Cl, Fe, B, Mn, Na, Zn, Cu, Ni, Mo
 
 

     Essential elements required for growth   -  chart

                                    1.  Organic Molecules  Structure   CHNOP

                                    2. Energy storage    P in ATP

                                    3. Ionic form   K, Ca, Na

                                    4. Redox reactions Fe, Cu

                                    See Chart In Text

Hoagland’s solution  Contains essential elements (1)  in optimum concentration (2)
 

                                    What were some of the forms of nitrogen in Hoagland's solution?
 

                                         See Chart In Text
 
 
 
 
 
 

Chelating Agents – form soluble complexes with insoluble ions - EDTA or DTPA
                                  Fe+3 insoluble,   Fe+2 soluble
 
 

                                        See Chart In Text

                                         Did you use chelators in the laboratory?
 

Influence of pH on uptake of minerals
 

                                       See Chart In Text
 

                         What was the pH of the solutions you made in the laboratory?
 
 
 
 

Relationship between growth and nutrient content

                 Chart: Deficiency zone, Adequate zone, Toxic zone, Critical concentration
 

                                         See Chart In Text
 
 
 
 
 
 
 
 
 
 

Mineral elements classified on the basis of their mobility within a plant and the ability to retranslocate during deficiencies

Mobile                                 Immobile elements

N, K, Mg,                             Ca, S, Fe, B, Cu
P, Cl, Na,
Z, Mo
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Activation of  cell respiration:
 

See Class Handout "respiration rate various times during germination"
 
 

Substrates for cellular respiration must be made available in the cotyledon.

Starch : polymers of glucose (alpha 1,4 linkage), straight chains

Amylopectin : polymers of glucose (alpha 1,4 linkage), branching (1,6 linkages)

           Beta amylase  nonreducing end

           Alpha amylase – interior part of starach

   How did you measure amylase in the laboratory?

            Starch phosphorylase  -  form glucose phosphates

            Debranching enzyme – breaks the 1, 6 linkage
 
 
 
 

Respiration - Oxidation of energy rich molecules (C6H12O6  ) to energy poor molecules  (CO2  and H2O) with the energy being transferred into biological usable energy  (ATP).
 

                          How and what substrates or products did you measure for detrmination of respiration in the laboratory?
 

Glucose contains 686 kcal mol-

         Aerobic Respiration Oxygen used during the process

 Overall Equation:

36 ADP + 36 Pi + C6H12O6 + 6 O2  -------->   6 CO2 +   6  H2O +   36 ATP

         Anaerobic Respiration Oxygen is not used during the process

   Overall Equation:

2 ADP + 2 Pi + C6H12O6   -------->   2 CO2 +   2 C2H5OH +   2 ATP
 

     Divided into three set of reactions:    Glycolysis, Citric Acid Cycle (TCA), Kreb
     Cycle, and Cytochrome Electron Transport System
 
 

   Coenzymes used during these processes:

      ATP     Undergo hydrolysis to form ADP (structural formula)

     NAD+ reduced to NADH (structural formula)

     FAD reduced to FADH2 (structural formula)

                               Study Figures in Text

Cyclic Phosphorylation (how ATP is used as an energy source)

                     ATP +   H2O ----------> ADP + Pi      - 7.3 kcal mol-

                 Glucose   ---------------->   Glucose - 6- phosphate           + 4.0 kcal mol-

                 Glucose-6-phosphate   +   Fructose ------> Sucrose + Pi

                     ADP + Pi  ------------------>  H 2O +  ATP       + 12 kcal mol-
 
 

Substrate Phosphorylation - acquire energy directly from a substrate  -  explain and give examples

Oxidative Phosphorylation - acquire energy through NAD being  reduced and then oxidized through the cytochrome system
                                                 explain and give examples
                                   Glycolysis    (cytosolic/plastidic processes)
 

        The energy conserving phase occurs in the cytoplasm; however, some of the substrates forming during the initial
        phase come from plastids.

  Examine the Figure in Text Concerning Glycolysis
 

                                                           SUMMARY BELOW

                                                             Glucose  (6carbons)  686 kcal mol-
INITIAL PHASE
                                             2     ATP    -------------->         2   ADP

                                                           Fructose 1,6 biphosphate
ENERGY CONSERVING PHASE

                                          PGAl                                             PGAl

                            NAD+  ------- >    NADH               NAD+  ------- >    NADH

                                         PGA                                                PGA  (biphospoglycerate)

                            2 ADP  ------>   2  ATP                  2 ADP  ------>   2  ATP
 

                                         PEP                                                   PEP

                                  Pyruvate (3carbons)                           Pyruvate(3 carbons)

        Focus on the carbon skeletons and amount of bioological energy being made available during this pathway.
 

Initial Phase  - Substrates from different sources are channeled  into triose phosphates

Energy Conserving Phase – Triose phosphate  converted into pyruvate

Enzymes  kinases and dehydrogenases identify where these occur

For each NADH coenzyme  formed  approximately 2 ATP may be generated via cytochrome

2 oxidative phosphorylation   Identify location in pathway.
4 substrate phosphorylation

Total ATP  =  8;     Net ATP  = 6

7.3 kcal mol-  per ATP

43.8 kcal mol- /   686  kcal mol-   X   100%      = 6.4%
 

Glucogenesis  formation of glucose through reversal of glycolytic pathway.

Not all steps are reversible.
 
 

                                                         STOP FOR EXAM 1
 

Reduction of pyruvate  = fermentation -   use up the reducing power (NADH) formed
No oxygen required

Total ATP  =  4;     Net ATP  = 2

7.3 kcal mol-  per ATP

14.8 kcal mol- /   686  kcal mol-   X   100%      =  2.2%

Energy values   and carbon skeletons
 

           Examine anaerobic equation above.
 
 
 
 
 
 
 
 
 
 
 
 
 

                                                GLYCOLYSIS SUMMARY

CARBON SKELETONS

      Initial substrates carbohydrates form triose phosphates.

      Final products – pyruvic acids  - two/glucose

ENERGY TRANSFORMATION

        four substrate phosphorylation/glucose
        two oxidative phosphorylation/glucose

 Gluconogenisis -  Review

                                                   Pyruvate

Two options:  1.  Low Oxygen (hypoxic/ anoxic)

                             Pyruvate is reduced forming CO2   + ethanol
                              (fermentation/ anaerobic respiration)
                               carbon skeletons/ energy net 2 ATP/glucose (no net NADH)
 
 
 
 

2. Ambient oxygen slightly lower or higher

                             Pyruvate is oxidized forming CO2  and water
                                 (aerobic respriation)

      Kreb Cycle/ TCA Cycle         enzymes located in mitochondrion

                             Review semiautotomous organelles (DNA + ribosomes)
                  Enzymes are genetically coded by nuclear and mitochondria DNA
 
 
 
 

Examine the Figure in Text Concerning Kreb Cycle/TCA Cycle   FIG. 11.6
 
 

   Enzymes are located in matrix of mitochondria

                                                TCA  SUMMARY

CARBON SKELETONS

      Initial substrates pyruvic acid from cytosol.

      Final products – carbon dioxide and water

         Carbon skeletons  -   citrate, oxoglutarate,  succinate ,  malate,  oxalate (OAA)
 
 

ENERGY TRANSFORMATION

        one substrate phosphorylation/ Kreb Cycle (2 per glucose)
        oxidative phosphorylation/ coenzymes 4 NADH  (3ATP/NADH), 1 FADH2 (2
        ATP/FADH2),

       Total ATP  =  15 per TCA

2 TCA per glucose;  6 per glycolysis  =  36 ATP

7.3 kcal mol-  per ATP

 262.8 kcal mol- /   686  kcal mol-   X   100%      =   38.6%
 

Examine the Figure in Text Concerning Kreb Cycle/TCA Cycle   FIG. 11.6

Alternative pathways in plants -   (A) malic enzyme
   (B) PEP carboxylase and malate dehyrogenase
   (C) Malate is stored in vacuoles
 
 

     Examine Handout Given Out in Class  FIG. 11.7
 
 
 
 
 
 
 
 
 
 
 
 

Electron Transport System converts energy of reduced NADH and FADH2 into ATP

Involves membranes of mitochondria to form a proton gradient to run a proton pump (chemiosmotic hypothesis)

1. Electron Transport Chain will Catalyze a Flow of Electrons from NADH to
        Oxygen

                              Involves  oxygen as end acceptor for hydrogen ions

                              Involve cytochromes  to transport electrons

       2.  Involve ATPase  F factor (F0F1)
 
 
 
 

            Examine the Figure in Text Concerning Cytochrome Electron Transport System and ATP synthase FIG. 11.8
 
 
 
 
 
 
 
 

Oxidation of NADH and FADH2 can be uncoupled from oxidative phosphorylation

   Inhibitors

              Cyanide inhibits cytochrome oxidase

              DNP dinitrophenol uncoulpler
 
 
 
 
 
 
 

How the substrates of glycolysis and citric acid cycle were determined.
 

     C-14 labeling experiment
 

               uniform labeling and specific labeling of carbon
 

               continuous labeling experiment
 

               pulse labeling experiment
 

Reactions of the oxidative Pentose Phosphate Pathway (cytosol)
(15% of ATP generated in some tissue)
          1. Produces NADPH   energy source

          2. Produces ribose- 5-phosphate

          3. Erythrose-4-phosphate (4 carbon) Forms with PEP to form phenolic
             compouds (lignins) and aromatic amino acids
 

Examine the Figure in Text Concerning Oxidative Pentose Phosphate Pathway (PPP)  FIG. 11.4

    Cyanide- Resistant Pathway
 

   Regulation of  Respiration -
                           Phosphofructokinase
                           Pyruvate kinase (ATP)
                           PEP

                           ATP/ADP ratio

Examine the Figure in Text Concerning Control of Glycolysis, Kreb and CETS  FIG. 11.13
 
 

Mitochondrial  Genome encodes many respiratory subunits.

    MtDNA   divided into two groups  A. – translation components (tRNA, ribosome
                     proteins, rRNA)  and  B. – oxidative phosphorylation complexes.

    Nuclear DNA encodes citric acid cycle enzymes
 
 
 
 

    Whole  plant and tissue respiration.
 

                       Plant may respire over half of daily photosynthetic yield
 

                       Organs and Tissue vary is respiration rates
 

                        Effects of  Temperature            Q10   = 2   between 0 and 30 centigrade
 

                      Climacteric Effect  plant parts (fruits, leaves, etc) before they senesce
                      the respiration rate greatly increases.

                                                     What would a graph showing the climacteric effect look like?

                      Pasteur Effect   High concentrations of oxygen inhibits glycolysis
 

                      Carbon Dioxide has a limited direct inhibitory  effect on respiration
                     3 - 5 %  carbon dioxide slows down aerobic respiration.
 
 

Photosynthesis   -  Reduction  of energy poor  molecules (CO2  and H2O)  to energy rich molecules  ( C6H12O6) with the energy being transferred from light which is absorbed by chlorophyll pigments.  Oxygen is given off as a product.
 

Glucose contains 686 kcal mol-

Joseph Priestley - oxygen gas is produced during photosynthesis
 

 Overall Equation:    6 CO2 +  6  H2O +  62 ATP + 36 NAHPH + H   - -------->   62P + 36 NADP + 72H + 62 ADP + 62 Pi +  C6H12O6  + 6 O2
                                       (chlorophylls a and b)
                                     Light - 9 to 10 photons – red and blue
 

 1937 Robert Hill  - Isolated chloroplast + iron salts (ferric) - oxidants
                                                      Placed in light:
 

                             4 Fe+++ +    H2O  -----------.    Fe++   +      O2    +   4    H+
 

Hill reactions: Oxygen is cleaved from water.
 
 

We now know that the electron acceptor is  the coenzyme:

                      NADP +   H+    ------------------.>     NADPH2

                            Review structure presented earlier
                                    PPP pathway

Light Saturation Point – Curve – see graph below

              Plot light intensity against photosynthetic rate

                                                     Examine Handouts From Class
 

Light compensation point. See graph below:

                                                     Examine Handouts From Class FIG. 9.8
 
 

Blackman’s Curves
 

                                                      Examine Handouts From Class FIG. 7.8
 
 
 
 
 
 
 
 

These curves demonstrate there are two sets of reactions:   light reactions (Hill reactions, light dependent) and
           dark reactions (Calvin Cycle, light independent).
 

        Absorption and Action Spectrum  (describe differences)
 
 

                                                          Examine Handouts From Class FIG. 7.8
 
 
 

         Far Red Drop-off
 
 

                                                           Examine Handouts From Class  FIG. 7.13
 
 
 
 
 
 
 

   1957  Emerson Enhancement Effect  - Demonstrates two Photosystems PS I and                       PS II
 

                                                         Exlplain why?
 
 

Photosystem I:

       11  polypeptides (6 formed by nucleus/ 5 formed by chloroplast genome)

       Pigments - 2 chlorophyll "a" (P700) to 130 chlorophyll "a"
      16 beta carotenes        -                  (core antenna + reaction center)
      Quinones                     -                                (carriers)

           Associated with:

               Ferredoxin (FE/S protein carrier)
               FAD, NADP
               Ferredoxin - NADP oxido - reductase

              Light Harvesting Center I     -     accessory light gathering

              Protein Kinase      -        maintain light balance between PS I and PS II
 

              80 - 120 chlorophyll molecules (3 chlorophyll "a" / 1 chlorophyll "b"

              Spans the entire membrane and permanently attached to PS I
 
 
 
 
 
 
 
 

Photosystem II:

         20 polypeptides

          Pigments - 2 chlorophyll Aa@ 680 to 50 chlorophyll Aa@
          Smaller number of carotenes             (Core antenna)

           Z (electron carrier forms water)

          Quinones Q-A  (primary electron acceptor)
          Pheophytin

                Associated with:

                    Q-B carrier                              ________
                    Plastoquinone                                         !
        Cytochrome b6                                       !          Electron transport system
                    Fe/S carriers                                           !           Linking PS I , PS II
                    Cytochome f                                           !
                    Plastocyanine  (Cu+ )          ________!

                   Water spliting complex --------         O2 split from water
                   Consisting of 3 polypeptide + Mn       H2O    ----->   2H   +    2 O2

                   Light Harvesting complex - II     -        antenna
                   8 chlorophyll "a"/ 7 chlorophyll "b",  carotenoids

                   50% of chlorophyll "a" and 75% of chlorophyll "b" located in LH II

                  Spans the entire membrane but not permanently attached
 
 
 
 

CF - 1 particle Photophosphorylation

      Polypeptide with CF - 1 head (ATP ase_, CF tail (channel through membrane)

       Protons moving through channel will drive force to synthesis of ATP

        Photophosphorylation is different from substrate and oxidative  phosphorylation
 
 

Light Dependent Reactions include:

         PSI, PS II, Photophosphorylation (ATP synthase)

         ATP formed by chemiosmotic mechanism

 These reactions are located in the membranes of the  thylakoid membranes

  Chloroplast consist of stroma, grana lamellae, stroma lamellae
 
 

                              Examine Handouts From Class or Figure in Text  FIG. 7.15, 7.16
 
 
 
 
 
 
 
 
 
 
 
 

Z scheme (PS II linked to PSI via cytochrome system)
 
 
 

                              Examine Handouts From Class or Figure in Text  FIG. 7.14
 
 
 
 

This system of electron transfer will pump protons from stroma side the membrane   to the lumen side of the membrane.
 

Water is oxidized to oxygen to conserve the flow of electrons.

 This proton gradient will allow the ATP synthase to form ATP
 
 

                              Examine Handouts From Class or Figure in Text  FIG. 7.33
 
 
 
 
 
 

Light absorbing antenna funnels energy to reaction center.

Light Harvesting complex proteins LHC II associated with PS II
Light harvesting complex proteins LHC I associated with PS I

resonance transfer -mechanism for light energy absorbed by chlorophylls “a” and “b”;  carotenoids to be conveyed to reaction center
 
 
 
 
 
 

                              Examine Handouts From Class or Figure in Text  FIG. 7.19
 
 
 
 
 
 
 

Both red and blue light may be absorbed by chlorophyll but the energy level must be reduced to that of 700 or 680 to drive electrons through the series of electron carriers (Z scheme).
 
 
 
 
 
 

Summarize:

 Red and blue light may be absorbed by both chlorophylls or other pigments (carotenoids)  by LHC II or LHC I.

The energy levels are funneled down to either the P680 or P700 reaction centers by resonance transsfer.

Photosystem II oxidizes water to oxygen in the thylakoid lumen and in the process releases protons into the lumen.

Cytochrome b6f  receives electrons from PSII and delivers them to PSI. It also transports additional protons into the lumen from the stroma.

Photosystem I reduces NADP to NADPH in the stroma by the action of ferredoxin (Fd) and the flavoprotein ferredoxin – NADP reductase.

ATP synthase produces ATP as proton diffuse back through it from the lumen into the stroma.
 
 
 
 
 

Review  “Z” scheme   Electrons  flow through PSII, Cytochrome, PSI utilizing red light to eject electrons into higher state, eventually forming reduced coenzyme (NADPH) and ATP

This represents a noncyclic electron flow.

PSII is predominately in stacked regions of thylakoid membrane

PSI and ATP synthase is predominately located in unstacked regions (stroma)

Cytochrome b6f dimer is evenly dispersed through all membranes

The ratio of PSII : PSI is about 1.5:1
 
 
 

    See Figure in Text  FIG. 7.18
 
 
 
 
 
 
 

In the stroma region of the membrane where PSI and cytochromes complexes are found, the electron flow may flow from PSI back to cytochrome forming only ATP and no NADP.
 
 
 
 
 
 
 
 
 
 
 
 
 
 

This represents the cyclic electron flow.  This will function in cells which require higher levels of  ATP .  Bundle sheath cells.
 

Some herbicides block this electron flow of electrons:

DCMU  -blocking electron flow at cytochrome

Paraquat – hydrogen acceptor
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

      LHCII antenna complex
 

                                        See Figure in Text  FIG. 7.20
 
 
 
 
 
 

   Carotenoids serve as photoprotective agents

   These molecules can quench (dissipate extra electron exicitation energy)
 
 
 

Thylakoid stacking allows  a balance between PSI and  PSII by protein kinases that phosphorylating  threonine residues on LHCII.
 

Control of Light Reactions which  in turn control the rate of the  Dark Reactions

Organization of protein complexes of thylakoid membranes
 

       (Refer to Handout From Class)
 

PS II located in stacked region

PS I and ATPase located in unstacked

Cytochrome are evenly distributed
 

PS II activated results in  reduced plastoquinone activates a protein kinase which phosphorylates PSII LHC

Electrostatic repulsion into unstacked region

PS I activated results in oxidized plastoquinone phosphatase is activated which remove phosphates from LHCII

migrate back
 
 
 

                                  Refer to Handout from Class
 
 
 

Where is oxygen produced?
Where is NADP reduced?
Which light is used to drive reaction centers?

Main product of light dependent reactions: ATP, NADPH + H,   Oxygen gas is byproduct.
 
 

    6 CO2 +  6  H2O +  62 ATP + 36 NAHPH + H   - -------->   62P + 36 NADP + 72H + 62 ADP + 62 Pi +  C6H12O6  + 6 O2

   6 CO2 +   6  H2O +   18 ATP + 12  NAHPH + H       - -------->     62P + 36 NADP +         18 ADP  +  C6H12O6  + 6 O2
                            (chlorophylls “a” and “b”)
                            Light - 9 to 10 photons

                 Labeling Studies  using C14 bicarbonate
 
 

                Chromatogram and Radioautograph
 
 
 
 

                                                      Refer to Handout  from Class
 
 
 
 
 
 
 
 
 
 
 

C14 bicarbonate labeling studies indicated that PGA as the first product formed.
 

                                                  Refer to Handout  from Class

Look for a two carbon compound
 

Percent  Radioactivity  in  Each  of  Three Carbons of PGA at Various Times

Carbon atom of PGA        1 minute    10 minutes        20 minutes      60 minutes

          1                                   82              70                     50                  33
          2                                    9               15                     25                  33
          3                                    9               13                     24                  33

Light - Dark changes in concentration of PGA and RuBP
(chart)
 
 
 
 
 
 

                                       Refer to Handout  from Class
 
 
 
 
 

Test tube containing chloroplast,  C14 bicarbonate, NADPH, ATP exposed to light
C14 fixed into glucose
 

Test tube containing chloroplast,  C14 bicarbonate, NADPH, ATP placed in dark
C14 fixed into glucose

Test tube containing chloroplast,  C14 bicarbonate, NADP, ATP placed in dark
C14 not fixed into glucose

Test tube containing chloroplast,  C14 bicarbonate, NADP, ATP exposed to light
C14 fixed into glucose
 
 

Since PGA (3 carbon organic acid) was formed this is known as the C-3 pathway.
 
 
 
 
 
 
 
 
 
 
 
 

                               SUMMARY OF THESE EXPERIMENTS

PGA and Ribulose Bisphosphate were heavily labeled.
The carbon in PGA is recycled.
NADP is reduced  during the light reactions.

Carboxylation of Ribulose Biphosphate is catalyzed by Rubisco.

Three stages:   Carboxylation  Rubisco used

                          Reduction  -  triose phosphates are formed
                                                 ATP and NADPH from light reactions are utilized
                                                  reactions occur in stroma
                          Regeneration   - regenerates  Ribulose-1,5-Bisphosphate  reductive pentose phosphate pathway
                                                               (review oxidative PPP)
 
 
 
 
 
 
 
 

Refer to Handout  from Class  FIG. 8.3
 
 
 
 
 
 
 
 
 
 
 

Light-dependent enzyme activation regulates the Calvin Cycle.

Refer to Handout  from Text  FIG. 8.5

Light dependent ion movement (Mg) regulates Calvin Cycle

Refer to Handout  from Text  FIG. 8.6
 

Light dependent membrane transport regulates the Calvin Cycle
                                  Trioses are transported into cytosol and converted
                                   to sucrose (via glucose), transporter are activated by light
 
 
 

Hatch, Slack and Kortschack working with corn and sugar cane discovered that the main product of photosynthesis in these plants was malate and aspartate.
 
 
 

Refer to Handout  from Class  FIG. 8.10
 
 
 
 

The enzyme utilized is PEP carboxylase:

Phosphoenolpyruvate + Carbon Dioxide   -------> OAA

OAA    + NADPH + H -------->   malate +   NADP

This pathway became known as the C-4 pathway
 
 

Refer to Handout  from Class
 
 

Kranz anatomy of Bundle Sheath Cells in these plants
 

Refer to Handout  from Text  FIG. 8.9
 
 
 

PEP Carboxylase - has a high affinity for water
                                  found in mesophyll cells/ not in bundle sheath cells

Rubisco - found in bundle sheath cells only
                 Need a lot of carbon dioxide to perform optimally
 
 

Not only found in tropical grasses but found in monocots and dicots.  This system probably evolved in the region near the equator.
 
 
 
 
 
 
 
 
 

Crassulacean Acid Metabolism   Succulent Species - Opuntia, Agave, Aloe, Crassula

      CAM

Stomata of CAM Plants open at night and close during the day.

Diurnal Cycle
 
 

Refer to Handout  from Class  FIG. 8.12
 
 
 

(Chart)

Adaption to conserve water

C-3 and C-4 are temporally separated
 
 
 
 
 

Refer to Handout  from Class  FIG. 8.11
 
 
 
 
 
 
 
 
 
 
 
 
 

Photorespiration -
 

Refer to Handout  from Class  FIG. 8.7
 

(chart) light dark cycle and carbon dioxide compensation point
 
 

Involves cooperative interaction between three organelles - chloroplasts, peroxisomes, and mitochondria
 
 
 
 
 
 
 

Competition for enzyme Rubisco and Ribulose 1, 5 - biphosphate

Found only in C-3 plants

Refer to Handout  from Class  FIG. 8.8
(chart) pathway
 
 

PHOTOSYNTHETIC CHARACTERISTICS OF THREE PLANT GROUPS

                                                     C-3                  C-4                    CAM
Leaf Anatomy              No Bu Sh.      Bundle Sheath        No Bu. Sh.

                                                            Rubisco      PEP carboxylase     PEP carboxylase
Carboxylating Enzyme                                        Rubisco in Bu. Sh.   Rubisco

Transpiration Ratio (H2O/dry wt    450-950                 250-350               18-125
increase)

CO2 Compensation Point                   30-70                        0-10                  0-5 (dark)
                                                                                                                           umol/CO2

inhibition by 21% O2                           Yes                         No                        Yes

Photorespiration Detection                 Yes                  Only Bu. Sh.          Late after-                                                                                                                                  noon
Dry Wt Increase (tons/                         22                          39                           1
hectare/year
 
 
 
 
 
 

CONVERSION OF TRIOSES INTO SUGARS AND STARCH IN THE CHLOROPLAST
 
 

   Triose phosphates are converted into starch  in chloroplast
                         Starch synthase, phosphorylase

   Triose phosphates are converted into sucrose  in cytoplasm
   to be transported out.
                            Sucrose synthase
 
 
 

REFER TO FIGURES IN TEXT  FIG. 8.14, 8.15
 
 
 
 
 
 
 

High cytoplasmic phosphate will favor chloroplast to release triose phosphate -
                           sucrose is synthesized

Low cytoplasmic phosphate will prevent chloroplast from releasing triose phosphate -
                  and starch is synthesized

Control of Sucrose Synthesis

      Stroma - pH, Mg, NADPH conc., ATO conc.
 
 

  FIG. 8.14
 
 
 
 
 
 
 
 
 
 
 
 
 

PHYSIOLOGICAL AND ECOLOGICAL CONSIDERATIONS
 

5% of incident energy is converted into carbohydrates
 
 
 

REFER TO FIGURES IN TEXT  FIG. 9.2, 9.4
 
 
 
 
 
 

Chloroplast movement and leaf movement can control light absorption
 
 
 

REFER TO FIGURES IN TEXTFIG. 9.5
 
 
 
 

Plants adapt to sun and shade
 
 

Shade Plants and Leaf location on plant

 Shade leaves have more chlorophyll per reaction center and a higher chlorophyll “b” to “a” ratio.

REFER TO FIGURES IN TEXT  FIG. 9.8

Sun Leaves have more rubisco and larger pools of xanthophyll
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.9
 
 

Response of photosynthesis to light intensity
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.8
 
 
 
 
 
 
 

C-3 plant    Light Compensation Point, Saturation point
                    Light limited, Carbon Dioxide limited
 
 
 
 
 
 
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.20
 
 
 
 
 
 
 
 
 
 
 
 

Sun Plant                                                    Shade Plant
 
 
 
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.11
 
 
 
 

Sun Plant grown under sun or shade conditions
 
 
 
 
 
 
 
 
 
 
 
 

Xanthophyll cycle
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.13
 
 
 
 
 
 
 
 
 

Carbon Dioxide Compensation point
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.8
 
 
 
 
 

CAM plants Aphotosynthetic carbon assimilation, evaporation and stomatal conductance@
 
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 9.21
 
 
 
 
 
 
 
 
 

Carbon isotope discrimination in C-3 and C- 4 plants
 

Atmosphere contains  12C .98 : 13C .011 : 14C 10-8

Compare   13C/12C   ratio to limestone located at various sites

Both plants discriminate against : 13C
 

C- 4 plants    have less   13C   than C-3 plants

Look at ratios of 13C/12C   you can determine if it has come from a C-3 plant or C-4 plant.

Sugar  Cane is a C-4; Sugar Beet is C-3
 
 

REFER TO FIGURES IN TEXT pp. 188
 
 
 

Nitrogen Metabolism  -
 

N2,   NO2,   NO3,   NH4,    organic nitrogen (urea)

Nitrogen cycle - nitrogen fixation, nitrification, denitrification, assimilaton,   ammonification
 

REFER TO HANDOUT GIVEN OUT IN CLASS
 

Nitrogen fixation                            Abiotic or Biotic
 

     Haber Process forms ammonia - Abiotic
 

     Free Living nitrogen fixers: Biotic

                   Cyanobacteria, Anabeana (heterocysts), Nostoc
                   Clostridium nonautotrophic

     Symbiotic nitrogen fixers: Biotic

                   Rhizobia       with   legumes
                   Anabaena     with  Azolla (water fern)
 

       Anaerobic

       Nodule formation - leghemoglobin - bacteroids

       Nitrogenase  -  reaction
                        N2 + 6e- + 12 ATP + 8 H+  ----->   2 NH4    + 12 ADP   + 12 Pi

REFER TO FIGURES IN TEXT FIG. 12.11 AND 12.12

      Ammonia is toxic - export nitrogen in the form of amides
                                                       (Asparagine and Glutamine)
 

Nitrification - conversion of ammonia into nitrates

Denitrification - conversion of nitrates into nitrogen gas

Ammoniafication - conversion of organic nitrogen into ammonia

Assimilation - conversion of ammonia and nitrates into organic nitrogen
 
 
 
 
 
 
 
 
 
 
 
 

Nitrate Assimilation-   roots and shoots

             Nitrate Reductase
 
 

REFER TO FIGURES IN TEXT FIG. 12.04 AND 12.05
 
 

                               Light enhances
 

             Nitrite Reductase
 
 

REFER TO FIGURES IN TEXT FIG. 12.04 AND 12.05
 
 

Ammonium can be assimilated into organic amides

        enzyme: glutamine synthatase               aspartate aminotransferase
                       glutamate synthatase               aspargine synthase
                       glutamate dehydrogenase
 

Transamination reactions  -  example

   organic acid(1) + amino acid(1) transfer ketone group for amine group to form
   organic acid(2) + amino acid(2)
 

  Glutamate + OAA     --------> aspartate   + oxoglutarate

                              aspartate aminotranferase
 

REFER TO FIGURES IN TEXT FIG. 12.6 AND 12.7
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Lipid Metabolism   - Oils in plants
 

Most lipids are in the form of Triacylglycerol
 
 

248
 
 
 

Fatty Acids and Glycerol                         Common Fatty Acids (12 – 18 carbons)
 
 
 

REFER TO FIGURES IN TEXT FIG. 11.4 AND 1tABLES 11.3 AND 11.4
 
 
 
 

Stored in Oleosomes of seeds (cotyledons)
     Used for membrane structure; chlorophylls, carotenoids, etc
 

Fatty Acid Synthesis occurs in plastids
  Cycle of two carbon additions
                  (Condensing enzyme)

  Glycerol comes from PGAL from glycolysis or photosynthesis
 
 
 
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 11.15 AND 11.16
 
 
 
 

Storage Lipids are Converted into Carbohydrates in Germinating Seeds
 
 

Three organelles - oleosome, glyoxysome and mitochondrion

              Lipase hydrolyzes lipids into glycerol and fatty acids

   Fatty acids are broken down into acetyl CoA molecules by Beta Oxidation

   Acetyl Co A molecules are converted into succinate in the glyoxysomes
   (glyoxylate cycle)

    Mitochondrion - succinate converted into malate

    Cytoplasm - malate converted into sucrose
 
 
 
 
 
 

REFER TO FIGURES IN TEXT FIG. 11.18
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

                                                       SUMMARY
 

                       SYSNTHES OF GLYCERIDES

                                   GLYCEROL IS SYNTHESIZED IN CYTOSOL FROM PGAL                                    (GLYCOLYSIS)

                                    FATTY ACIDS ARE SYNTHESIZED IN PLASTIDS
                                     ACEYL –CoA ENTER CYCLES OF TWO-CARBON                                                   ADDITION

                                   FATTY ACIDS + GLYCEROL UNDERGO                                                                    CONDENSATION  TO FORM TRIACYLGLYCEROL –                                             WATER IS LOST

                                    LIPIDS ARE STORED IN OLEOSOME FOR LATER USE                                         OR FORMS MEMBRANE PHOSPHATE LIPID BILAYER
 

                                    IF STORED (USUALLY SEEDS) IN OLEOSOMES, LIPIDS                                       ARE CONVERTED INTO SUCROSE TO BE MOVED OUT

                                    OLEOSOMES – LIPIDS ARE HYDROLYZED – WATER IS                                      INSERTED AND MONOMERS OF FATTY ACIDS AND                                            GLYCEROL ARE FORMED - LIPASE

                                     GLYCEROL MAY BE FURTHER BROKEN DOWN BY                                             BEING CONVERTED BACK INTO PGAL AND MOVING                                         BACK INTO GLYCOLYSIS

                                     FATTY ACIDS ARE CONVERTED INTO SUCROSE VIA :

                                                 BETA OXIDATION FORMING ACETYL CoA
                                                 GLYOXYLATE CYCLE FORMING SUCCINATE
                                                 KREB CYCLE FORING MALATE
                                                 GLYCOLYSIS IN REVERSE FORMING GLUCOSE                                                   AND FRUCTOSE
                                                 SUCROSE SYNTHESIS
 
 
 
 
 
 

  PHENOLIC COMPOUDS

              PHENOLS

PHENYLALANINE IS THE MAIN INTERMEDATE IN BIOSYNTHESIS OF PLANT PHENOLICS

SHIKIMIC ACID PATHWAY CONVETS SIMPLE CARBOHYDRATES WHICH COME FROM GLYCOLYSIS AND PPP PATHWAY INTO PHENYLALANINE H

           ERYTHROSE –4- PHOSPHATE FROM PPP
           PEP – PHOSPHOENOLPYRUVATE FROM GLYCOLYSIS
 
 
 

Translocation  (movement of photosynthates) in Phloem Tissue  ( sieve tube elements)
 
 

                                                             Table 10.1
 
 
 
 
 
 

Companion cells aid the sieve elements – alive, numerous plasmodesmata
ordinary companion cells, transfer companion cells and intermediary companion cell

Phloem Sap is collected and analyzed
 

                                                             Table 10.2
 
 
 
 

Sugars are translocated in nonreducing form – sucrose
Nitrogen in the form of glutamic acid and glutamine; aspartic acid and asparagine

Photosynthates move from a source to sink (may be up or down, bidirectional)

Bulk Flow (Pressure – Flow Model )
 

                                                              Figures
 
 
 
 
 
 
 
 
 
 

Source to  Sink  (involves active and passive transport mechanisms)

Apoplast – nonliving part of cell - diffusion

Symplast living part of cell - plasmodesmata

ordinary companion cells contains  plasmodesmata towards its own sieve cell
      sucrose moves from apoplast of mesophyll into synmplast of companion
      sucrose moves from symplast of companion to symplast of sieve tube

transfer companion cells  have fingerlike wall ingrowths – increase surface area        of cell membrane; these cells contain plasmodesmata towards its own sieve cell
      sucrose moves from apoplast of mesophyll into synmplast of companion
      sucrose moves from symplast of companion to symplast of sieve tube

intermediary companion cells have many plasmdesmata towards the mesophyll      cells
    sucrose can move by symplast movement from mesophyll source into sieve tube

Rates of movement exceeds rate of diffusion -  1 m/hr-1

Bidirectional movement of molecules is due to separate set of sieve tubes –
not  individual cells

Low temperature have slight effect on translocation which indicate energy requirement is small
 

Phloem Loading -  from Chloroplasts to Sieve Elements

Triose from chloroplast  to cytosol converted to sucrose
Sucrose moves to vicinity of sieve tube cell in smallest veins (short distance transport)
Sieve element loading sugars move into sieve elements and companion cells

Fig. 10.13
 
 
 
 
 
 
 

Movement from mesophyll to sieve elements via apoplast or symplast
 
 
 

Fig 10.14
 
 
 

Sieve Element Loading use a Sucrose – Symport System
 
 

Fig. 10.16
 
 
 
 
 
 
 
 
 

Phloem Loading – Specific and Selective

                 Polymer Trapping Model

              sucrose combines with  galactose forming  raffinose
               in intermediary cell, raffinose selectively moves into sieve element

Fig. 10.17
 
 
 
 

                                 Symplastic  uses plasmadesmata
                                 Apoplastic uses  sucrose  - H Symporter
 
 

Movement though vascular tissue to sink is long-distance trasnport
 

Phloem unloading – symplastic or apoplastic
 

Fig.  10.18
 
 

Transition of a Leaf from Sink to Source is gradual

Sink Strength is a Function of Sink Size and Sink Activity
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

                   Water and Plant Cells/ Water Balance of a Plant
 

 Terms - Diffusion, Osmosis, Facilitative Diffusion, Active Transport
                Adhesion, Cohesion, Transpiration
                                    pp 36 - 45
        Fig. 3.6
 
 

Review the Mineral Nutrition Laboratory - nitrates, nitrites, and ammonia in  relation to moving out of the soil into the plant.
 

Uptake of water occurs at tips of roots - root hairs
 
 
 
 
 

Examine Figures 4.1, 4.2, 4.3 in text
 
 
 

   Apoplast and Symplast  (review definition)

  Epidermis, Cortex
 
 
 
 
 
 
 
 
 
 

   Endodermis with Casparian Strips  (selective absorption) – forces ions to move          into  symplast via active transport which is selective.

  When water moves from apoplast to symplast – passive
  When minerals move from apoplast to symplast - active
   Two types of tracheary elements in xylem: Tracheids and Vessel Elements

           Pits
Examine Figures 4.3,4.6 in text
 

   Root Pressure -
 
 

    Transpirational Pull - Adhesive and Cohesive Forces

    Two factors effect  transpirational pull - difference in water vapor concentration       and diffusional resistance

See Figures Handed Out In Class
 

Examine Figures 4.10 in text
 
 
 
 
 

      Roll of Stomatal Control

 Two types of guard cells -  kidney bean shaped and bulbous ends - grass
 

Examine Figures 4.13, 4.15  in text
 
 
 
 
 

Transpiration ratio =   moles of water transpired/ moles of carbon dioxide fixed

                                         C-3 Plants  =  500      (500 water lost/ 1 carbon dioxide fixed)

                                         C-4 Plants  =  250/1
                                                  fewer stoma
                                         CAM plants  50/1
                                                  fewer stoma and sunken
 
 

                    Cavitation – air bubble form in tracheary elements
 
 

                    Hollow trees, active xylem
 

Solute transport  -  Via of channels,  carriers, proton pumps
 
 

Examine Figures 6.14, 6.17 in text
 
 
 
 
 

Secondary Active Transport  uses electrochemical potential gradients.

Examine Figures 6.9, 6.7 in text

  Plants use Hydrogen ions or Calcium ions
   Hydrogen ion pumping ATPase and Calcium pumping ATPases

Call these symports
 
 
 

Hormones -   chemical mediators for intercellular communication

    Synthesized at one location and mode of action occurs at a different location.

    Small amounts required to stimulate a mode of action

 
Plant Hormones  five classes  (auxins, cytokinins, gibberelins, abscisic acids, ethylene
 

Auxins -  stimulates cell elongation – place on one side of stem and the stem bends
                     towards this direction

   Natural Auxin is IAA  Indol-3-Acetic Acid

                          Chart

Examine Figures  in text
 
 
 
 
 
 

 

  Quantified by : bioassay -  coleoptile straight-growth test  (detect small amounts)

                             Radioimmunoassay – labeled antigen, antibody, precipitates
 
 

                                                   chart

     Examine Figures  in text
 
 
 
 
 
 
 
 
 
 

Biosynthesis occurs  in leaf primodia, developing leaves and developing seeds
Largest amount is at the shoot apex (stem tips)
Synthesized from the amino acid tryptophan

 Examine Figures  in text Chart – 19.5, 19.6

Hydathodes   auxin synthesis
GUS reporter gene – with auxin-sensitive promoter
GUS stain blue     -    moves towards sink and stimulates differentiation of xylem tissue
 
 

IAA is the  biologically active form.
Conjugated IAA is inactive; stored in this form
(conjugated with glucose, inositol, amides, glycoprotein)
 

IAA is degraded to control development
(oxidative degradation)

Two subcellular pools of IAA: Cytosol and Chloroplast (.33)

  IAA-  does not cross membrane
  IAA conjugates located in cytosol
 
 
 

Examine Figures  in text
 
 
 
 
 
 
 

Auxin is transported polarly from shoots to roots
(requires energy, and is gravity independent)
Auxins move basipetally to the tissue below
 
 
 
 
 
 
 

Chemiosmotic Model explains polar auxin transport   anionic form of IAA move through  auxin transport carriers  concentrated  on basal end
Active and Passive movement
 

                                              Chart
 

Examine Figures  in text
 
 
 

PIN protein  are carriers specifically transports IAA at basal  ends of cells

These pin proteins are rapidly cycled to membrane.
 
 

 
    Parenchyma cells of embryonic tissue meristiematic region, region of elongation
    IAA moves nonpolarly through sieve tube cells of phloem
 

  Levels of IAA in different regions of plants
 

Optimum concentration is 10-5, 10-6 M for stem tissue
Optimum concentration is 10-10, 10-12 for root tissue
Higher than this causes inhibition
 
 
 

Physiological Effects of Auxins

Cell Elongation

        Auxin promote growth in stems but inhibit growth in roots

         Auxin rapidly  increases the extensibility of the cell wall – 5 to 10 fold in 10                minutes
 
           Wall loosening (protein) expansins breaks cellulose cross linkages
            under acidic conditions.

                                           Read pages 331 - 335
 
 
 

          Acid Growth Hypothesis - Auxin rapidly increases the extensibility of the
          cell wall and increases cell extension.
 

               Activates   H ion ATPases

               Synthesizes  H ion ATPases
                           Protein inhibitors such as cyclohexamide inhibits the cell wall                                       loosening.
 
 
 
 

Model for IAA induced H+ extrusion
 

Cessation of wall expansions is irreversible.

       Secreted matrix polysaccharides are altered to form tighter complexes

       De-esterfication of pectins leads to more rigid pectin gels

       Cross linking of  phenolic groups in the wall  makes for a more rigid cell wall
 
 
 
 
 

PHOTOTROPISM- Cholodny-Went Model

     May be mediated by the lateral redistribution of auxin

19.26

Examine Figures  in text
 
 
 

                                Production of auxin
 
                                Perception of unilateral light stimulus
                                (action spectrum indicates blue light,
                                 flavoprotein is light receptor, kinase
                                 activity)
 
                                 Lateral transport

19.27
 

Examine Figures  in text
 
 
 
 
 
 
 

GRAVITROPISM- Cholodny-Went Model

        Involves lateral redistribution of IAA
 

     Gravity Perception Involves Amyloplasts in  Cells of the  Starch Sheath and Root      Cap (statoliths)
 

      19.30
 

     Stems – auxin stimulates cell elongation

     Roots -  more sensitive to auxin

                   Root Cap may play a role in the lateral redistribution of auxin
 

     19.33
 
 
 
 
 
 
 
 
 
 
 
 

Auxin regulates Apical Dominance

             Cytokinin and ABA also play a role in apical dominance

19.36
 
 
 
 
 
 
 
 

Auxin  promotes formation of lateral roots and adventitious roots
 
 

19.38
 
 
 
 

Auxin delays the onset of leaf abscission

     Auxin moving from leaf blade prevent abscission layer from forming
 
 

Auxin regulates floral bud development
 
 
 
 

Auxin promotes fruit development

             Fruit set,  Parthenocarpy
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Auxin induce vascular differentiation

            High auxin concentration stimulates xylem and phloem tissue to develop
 

            Low auxin concentration stimulates phloem differentiation
 
 
 
 
 
 
 
 
 
 
 

GIBBERELLINS -   GA3, GA1
 

    Structure:
 
 
 
 
 

    Bioassay: several, dwarf rice sheath

    Synthesis controlled by genes since dwarf plants are affected and
     normal size plants are not affected by GA

 
    Gibberellins are synthesized via the Terpenoid Pathway

    GA synthesized in developing seeds (highest concentration) and  leaves (young)
    GA may be conjugated to other organic molecules – glucose

     Processes controlled by GA:

                         Photperiodism – Day length effects flowering in some plants
                                                     GA is synthesized during long days

                         Bolting - Cabbage plants, rosette forms under short day,  undergo                                                stem elongation and flowering only under long days.
                                         Application of GA induces bolting.
 
 

                                       20.9
 

 
 
 
 
 

                                       GA stimulates stem growth  in dwarf and rosette plants
                                                 (cell division and cell wall extensibility in internode                                                        region)   Compare to auxins: not polar, not at tips.
 

          Stratification-  cold temperature required for germination of certain seeds
                                    GA (exongenous) can replace this process in some seeds
 
          Vernalization - cold temperature required for flowering (vernalization)
                                   GA (exongenous) can replace this process in some seeds
 
                                    Winter wheat is a biennial, requires cold temperature to                                                flower. GA (exogenous) can overcome this process.
 

          Gibberellins regulate transition from juvenile to adult phases
                   woody species have different leaves, GA (exogenous) can induce Ivy to                         revert from mature to juvenile forms.
 

        Sex determination – monoecious  plants (corn)  and dioecious plants – spinach

              GA (exogenous or endogenous – 100 time more GA in tassel) causes male                           flowers – short days  and cooler night induce tassels; spinach is opposite                      - staminate flower are produced when GA is added
 
 
 
 
 
 
 

        Promote Fruit Set – Parthenocarpic  Fruit

                  Grapes Thompson’s seedless grapes – two treatmets – 1st  to induce fruit
                    formation and  2nd  to increase size
 
 
 
 

 
 
 
 
 
 
 
 

Malting – Mechanism of Gibberellin Action: Mobilizing Endosperm Reserves

  GA formed in embryo of cereal grains; induces alpha production occurs in
  aleurone layers; moves to endosperm where it breaks down starch into sugar
  which is mobilized out stimulating growth (germination)
  GA stimulates transcription of alpha amylase mRNA

                 20.17
 
 
 
 
 
 
 
 
 
 
 

 
 
 
 

Cytokinins

Kinetin – synthetic ;    Zeatin – natural

 
Purines                               Fig. 21.3
 
 
 
 
 
 

Assays:     Bioassay -  radish seed cotyledon expansion bioassay performed in the                                           laboratory

                  Immunological methods -
 

Synthesized in the root apical meristems, small amounts in young leaves and shoot meristems
 

Transported  through the xylem tissue
 

Main function -  stimulates cell division in meristematic regions and cambiums
 
 

Tumor induction  by Agrobacterium tumefaciens
 

Crown Gall Disease
 
 
 

 21.6
 
 
 
 
 

Ratio of auxin to cytokinin regulates morphogenesis in cultured plant tissue

low kinetin/ high auxin favor root differentiation,  higher kinetin/ lower auxin favor shoot differentiation
 

21.12 or table
 
 
 
 
 
 
 
 
 
 
 
 
 

Ti Plasmid and Plant Genetic Engineering
 
 

Page 631
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Cytokinin Regulated Processes
 
 
 

Modify Apical Dominance and Promote Lateral Bud Growth
 
 

Cytokinins Delay Leaf Senescence
 
 
 
 

Cytokinins Promote Nutrient Mobilization
 

21.15
 
 
 
 
 
 

Cytokinins Promote Chloroplasts Maturation

21.16
 

Seeds germinated in the dark produce pale, spindly seedlings. – etiolated

Expose a dim light to seedlings and chloroplasts will form. – photomorphogenesis

Absorption/action spectrum indicates that red and far-red light is responsible.

Pigment responsible is phytochrome, a protein blue pigment common in etiolated parts of a plant.

Ethylene   C2H4

  Produced throughout the life cycle of the plant.

                  Abundant in young leaves and senescing organs
                            Ripening bananas
 

   Synthesis starts with the amino acid methionine

    Yang Cycle –

     Aminocyclopropane (ACC)

    ACC may be conjugated

     Stress and age induced

     Auxin and cytokinin induced

     Inhibited by Ag  and carbon dioxide
 
 
 
 
 
 

Fruit Ripening   Senescence (death)  of fruit; breakdown of cells releasing organic acids

Classify fruits as:  Climacteric Fruits – banana and apples
 
 

                                 Nonclimacteric Fruits – grape cherry
 

Leaf epinasty
 
 
 
 

Stimulates flower senescence
 
 

Stimulates root hair formtion
 
 

Break seed dormancy
 
 

Induces Flower formation in pineapple
 

Enhances leaf abscission
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Abscisic  Acid        Dormin

ABA

Biosynthesis occurs in plastids  from
carotenoid intermediates
 
 
 

Inactivated by oxidation or conjugation.
 
 
 
 

Translocated through xylem and phloem (mostly phloem).
 
 

Physiological Effects of ABA

Maintains seed and bud dormancy, functions during
water stress (maintain desiccation tolerance).
 
 
 

Seed Dormancy controlled by ABA and GA.
 
 
 
 

Vivipary-

Immature embryos removed
from seeds develop right
away(precociously)
 
 
 
 
 
 

Accumulates in dormant  seeds and buds
 
 

ABA  closes stomata during water stress
 

1. Prevents stomatal opening by inhibiting inward
K ion channels and plasma membrane proton pumps

2. Promotes stomatal closing by activating outward
anion channels, thus leading to activation of potassium ionse
efflux channels.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

     Phytochrome Pigments
 

Seeds germinated in the dark produce pale, spindly seedlings. – etiolated
 
 

Expose a dim light to seedlings and chloroplasts will form. – photomorphogenesis
 

Absorption/action spectrum indicates that red and far-red light is responsible.
 

Pigment responsible is phytochrome, a protein blue pigment common in etiolated parts of a plant.
 

Lewis Flint demonstrated that the effects of red light (650 to 680) is reversed by far-red light 710-740) in lettuce seed germination.
 
 
 

17.2
 
 

Several activities are controlled  by photoreversible response.
 

17.1
 
 
 
 
 

Pr/Pfr model
 

17.3
 
 
 
 
 
 
 
 
 

Structure of Pr and Pfr

Pfr is the physiologically active form

Phytochrome synthesis involves phytochromobilin formed in plastids and a phytochrome apoprotein synthesized in the cytoplasm.

17.6
 
 
 
 
 
 
 
 

Distribution of phytochrome
 
 
 

Phytochrome responses can be distinguished by the amount of light required

                            VLFRs – very low fluence responses are nonphotoreversible

                             LFRs – low fluence responses are photoreversible

                             HIRs – high fluence responses are propotional to irradiance
 

Table 17.2 and 17.3
 
 
 
 
 
 

Photoperiodism   ability of an organism  to detect day length
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Short Day Plants     example – Chrysanthem morifolium,  Xanthium strumarium
 
 
 

Long Day Plants      example – Spinach
 
 

Plants Monitor Day Length by measuring the length of the Night
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Leaf is the Site of Perception of the Photoperiodic Stimulus
 

Phytochrome is the main Photoreceptor
 
 

 

 
 
 
 
 

 

 
 
 
 
 
 
 
 
 
 
 
 

Phytochrome regulates certain daily rhythms
 

                        circadian rhythms  (nyctinasty in leaves – pulvinus of legumes)